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Part:BBa_K3726110

Designed by: Lucia Tapia   Group: iGEM21_MADRID_UCM   (2021-10-08)


5CON1(H)_NS4-up (PCC 11801)


This part is an homology 5’ connector harboring the up homology arm for the homologous recombination within the Neutral Site Nº 4 of PCC11801.

Within the Marburg Collection design, connectors are found in the upstream (5’) and downstream (3’) regions of the level 1 assemblies, flanking the transcriptional unit. This allows the further assembly of multiple transcriptional units into a level 2 genetic construct using level 1 parts flanked by different connectors. To know more about, read the design principles of Marburg Collection: https://2019.igem.org/Team:Marburg/Part_Collection.

Among other functions, connectors can also be used to include homology regions for integrative recombination in the chassis genome. This way 5’ Connector parts can harbor the up / down homology arm required for double homologous recombination.

The part has been designed in accordance with the Marburg Collection guidelines. 5’ / 3’ Connectors correspond with the parts found Upstream / Downstream of the level 1 assembled transcriptional unit.


Sequence & Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 130
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal PstI site found at 130
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 283
    Illegal XhoI site found at 403
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 130
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 130
  • 1000
    COMPATIBLE WITH RFC[1000]


The genomic integration loci targeted by this part corresponds with a novel neutral site for Synechococcus PCC11801. This neutral site has been identified by the MADRID_UCM 2021 iGEM team as a part of their project. To know more about the discovery process visit the section Software of 4C_Fuels project. https://2021.igem.org/Team:MADRID_UCM/Software

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